· 3 min read

What to Do After Stripe Flags Most of Your Orders

If Stripe just flagged most of your orders, here’s what it means, why it happens, and how to fix it before your account gets frozen.

What to Do After Stripe Flags Most of Your Orders

You log into Stripe and see something alarming: a huge chunk of your recent orders are flagged for review. Maybe some are marked as high-risk. Maybe others are stuck in manual verification. Either way, your payment flow just hit a wall, and you need answers fast.

Let’s walk through what’s actually happening, why Stripe might be flagging orders, and how to get back on track without making things worse.

First, Understand What Stripe’s Fraud System Is Doing

Stripe uses a machine learning system called Radar to evaluate every transaction. It scores each payment and applies rules based on risk thresholds. If too many of your orders get flagged, your account may face rolling reserves, payout delays, or even shutdown.

Here’s what Stripe is likely looking for:

Stripe doesn’t just block fraud. It blocks possible fraud. And when the system starts seeing patterns it doesn’t like, it gets aggressive fast.

Why Most of Your Orders Might Be Flagged

If the majority of your transactions are getting flagged, something triggered Stripe’s risk filters on a broad scale. Common reasons include:

Even if the orders are legit, Stripe doesn’t know that. It only sees data patterns. And it would rather flag a good order than let a bad one through.

What You Should (and Shouldn’t) Do Next

If Stripe’s system starts blocking or flagging a majority of your payments, here’s what to do:

DO: Review the flagged orders

Look for patterns. Are they all international? Coming from the same marketing campaign? Sharing similar card types? The more detail you gather, the easier it is to adjust your processes or argue your case.

DO: Adjust Radar settings (if you can)

If you’re on Stripe Radar for Teams, you can customize your fraud rules. You might lower the sensitivity on certain checks, create allow-lists, or set up smarter velocity limits. If not, you're stuck with the default rules.

DO: Contact Stripe support early

Don’t wait for a full freeze. Reach out with specific info: order IDs, fraud checks passed, customer verification data, etc. Show them you’re watching closely and acting in good faith.

DON’T: Re-run payments manually

Retrying transactions from the dashboard can trip more fraud filters. You might make the situation worse. Let customers retry on their end or reach out individually.

DON’T: Ignore the alerts

Flagged orders can be a warning shot. If the trend continues, you might face stricter penalties or even a full ban. Don’t assume this will blow over.

How to Prevent This in the Future

Stripe's fraud filters work best when you help them work smarter. Here’s how to avoid another wave of blocked transactions:

If You’re in a High-Risk Category, Consider Diversifying

Stripe is popular, but not always forgiving. If you sell digital goods, run subscriptions, or operate in a category prone to chargebacks, you might want to:

Having a single point of failure—especially one as risk-sensitive as Stripe—can leave your business exposed.

Final Thoughts

Getting hit with a flood of flagged transactions can feel like your business is under attack. But it’s usually a warning sign, not a death sentence. What matters most is how you respond. Watch the data, clean up weak spots, and work with Stripe (not against it) to regain control.

If you catch the issue early and act with intention, you can reduce flags, keep your payouts flowing, and stay off Stripe’s internal risk radar.


Stop Fraud Flags Before They Happen

Stripe’s filters don’t always get it right. Want to reduce false flags, avoid dispute blowups, and keep your account in good standing? Learn how Chargeblast helps merchants fight back before it’s too late. Whether it’s pre-filtering high-risk orders, reducing disputes, or getting expert help on appeals, we’ve got your back.

Let us keep the fraud filters off your best customers, so you can focus on sales.